Data from: Phylogenetic systematics and evolution of the spider infraorder Mygalomorphae using genomic scale data

Opatova V, Hamilton C, Hedin M, Montes de Oca L, Kral J, Bond J

Date Published: September 13, 2019

DOI: https://doi.org/10.5061/dryad.870n1qj

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Title Opatova_et_at_2019_supplementary_material
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Description Tables Table S1: Specimen locality data Table S2: Specimens used in the combined analyses of genomic and transcriptomic data (DNAAA_matrix). Table S3: Character coding for web type ancestral state reconstruction Figures Supplemental Figure 1. Tree topology obtained in maximum likelihood (ML) analyses conducted in RAxML. Supplemental Figure 2. Tree topology obtained in Bayesian inference (BI) analyses conducted in ExaBayes. Supplemental Figure 3. Tree topology obtained in maximum likelihood (ML) analyses conducted in IQ-TREE. Supplemental Figure 4. Phylogenetic tree inferred after removal of Paratropididae terminals (“No_Paratropis” dataset). Supplemental Figure 5. Tree topology obtained in species tree analysis conducted in ASTRAL. Supplemental Figure 6. Comparison of resulting tree topologies obtained by concatenated analyses conducted in RAxML and ExaBayes and species tree approach conducted in ASTRAL. Supplemental Figure 7. Divergence time estimates of mygalomorph spiders inferred by treePL with placement of the calibrations. Supplemental Figure 8. Divergence time estimates of mygalomorph spiders inferred by treePL with the confidence intervals. Supplemental Figure 9. Phylogenetic tree of Mygalomorphae with current classification scheme (World Spider Catalog 2019). Data Matrices and Input Files RASP_ingroup.tre_dis.csv RAxML_DNAAA.nex RAxML_DNAAA_partitions.txt RAxML_ExaBayes_all_taxa.nex RAxML_ExaBayes_all_taxa_partitions.txt RAxML_No_Paratropis.nex RAxML_No_Paratropis_partitions.txt Tree Files ASTRAL_all_taxa.tre ASTRAL_all_taxa.trees ExaBayes_all_taxa.tre RAxML_DNAAA.tre RAxML_No_Paratropis.tre RAxML_all_taxa.tre treePL_boot_dated.tre Sequence Files Sequences per locus: L1 - L556 (472 loci), sequences before MAFFT alignment and ALISCORE/ALICUT treatment
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Opatova V, Hamilton C, Hedin M, Montes de Oca L, Kral J, Bond J (2019) Data from: Phylogenetic systematics and evolution of the spider infraorder Mygalomorphae using genomic scale data. Dryad Digital Repository. https://doi.org/10.5061/dryad.870n1qj
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